Benedikt Singer Benedikt Singer

Contact

Email: singerbenedikt1@gmail.com
GitHub: benediktsinger
LinkedIn: Benedikt Singer
Orcid ID

Experiences

Academic Internships

2024/04-
2024/07
Internship Ecole Polytechnique Federal de Lausanne (EPFL);
Leveraging the EC-number to improve sequence design of enzymes;
Supervisor: Prof. Matteo Dal Peraro

2023/01-
2023/09
Master’s Thesis University of Washington -Institute of Protein Design;
Fine-tuning a SE3-equivariant transformer (RoseTTAfold2) on protein-protein interactions;
Supervisor: Prof. David Baker

2022/02-
2022/11
Master’s Thesis Institute of Science and Technology Austria;
Software Development using C++ and Python in a Cryo-ET/EM data pipeline;
Supervisor: Prof. Florian Schur

2021/07-
2021/09
InternshipVienna University of Technology ICEBE;
Extracting mtDNA of Aspergillus species using a metagenomic assembler (metaSPAdes) based software;
Supervisor:Prof. Matthias Steiger

2020/01-
2020/02
Bachelor’s ThesisVienna University of Technology ICEBE;
Screening of cyanobacteria using FACS and HPLC;
Supervisor:Prof. Oliver Spadiut

Teaching

2022/02-
2022/07
Tutor Software Development in C++; University of Applied Science Campus Vienna
2023/04-
2023/09
Mentor Rotation grad student project; University of Washington - Institute of Protein Design

Journal articles

Education

2020-
12/2023
Master of Science/Diplom-Ingenieur: Technical Chemistry in biotechnology and bioanalytics,
Vienna University of Technology; EQF Level: 7
2020-
2022
Extension curriculum: Digital competences (30 ECTS),
Vienna University of Technology
2020-
2022
Master of Science: Bioinformatics (with distinction),
University of Applied Science Campus Vienna; EQF Level: 7
2017-
2020
Bachelor of Science: Technical Chemistry,
Vienna University of Technology; EQF Level: 6

Skills

Language Skills

French Oral and Written: B1
English Oral and Written: C1/B2

Digital Skills

Programming and Scripting: C++ , Python (scientific Python and PyTorch), R

Database: SQL (SQLite)

Text Processing: Open Office, Markdown, LaTeX

Other: Version Control (Git), Linux (Shellscripting), Modelling (UML)